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Description
This collection contains genotype data collected as part of the NIDA Center for GWAS in Outbred rats and more than 10 additional research projects that use N/NIH heterogeneous stock (HS) outbred rats. We obtain genotypes for DNA samples derived from rats that are phenotyped by different research projects. We use these genotypes to perform genome wide association studies (GWAS) and a number of related analyses. Data in this release contains genotypes for 19,513 N/NIH heterogeneous stock (HS) outbred rats from the breeding colonies MCW: NMcwi:HS RRID:RGD_2314009, and WFU: NMcwiWFsm:HS RRID:RGD_13673907, the University of California San Diego: RRID: RGD_155269102, the University of Tennessee Health Sciences Center, or Oregon Health and Sciences University. NIDA center for genetic studies of drug abuse in outbred rats (P50DA037844). Research Data Curation Program, UC San Diego, La Jolla, 92093-0175 (https://lib.ucsd.edu/rdcp) Palmer, Abraham A. (2024). Heterogeneous Stock (HS) Rat Genotypes, Version 5. In Genotype Data from: NIDA Center for GWAS in Outbred Rats. UC San Diego Library Digital Collections. https://doi.org/10.6075/J01G0MG9 We release updated data every 2-3 months, and provide detailed information on our genotyping pipeline in the Readme file associated with the object.
Type
dataset
Identifier
ark:/20775/bb08998715
Language
English
Subject
Genetics Heterogeneous stock (HS) rats Norway rat Rat Low-Coverage Whole Genome Sequencing (lc-WGS) Imputation Genotyping-by-sequencing (GBS) Rattus norvegicus
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