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Dataset / Data from: Carbonic Anhydrases, EPF2 and a Novel Protease Mediate CO2 Control ...

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Title
Data from: Carbonic Anhydrases, EPF2 and a Novel Protease Mediate CO2 Control of Stomatal Development
Date Created and/or Issued
2015
Contributing Institution
UC San Diego, Library, Research Data Curation Program
Collection
Data from: Carbonic Anhydrases, EPF2 and a Novel Protease Mediate CO2 Control of Stomatal Development
Rights Information
Under copyright
Constraint(s) on Use: This work is protected by the U.S. Copyright Law (Title 17, U.S.C.). Use of this work beyond that allowed by "fair use" requires written permission of the UC Regents. Responsibility for obtaining permissions and any use and distribution of this work rests exclusively with the user and not the UC San Diego Library. Inquiries can be made to the UC San Diego Library program having custody of the work.
Use: This work is available from the UC San Diego Library. This digital copy of the work is intended to support research, teaching, and private study.
Rights Holder and Contact
UC Regents
Description
Data are deposited here from RNA-Seq transcriptomic experiments analyzing the Arabidopsis response to low and elevated carbon dioxide growing conditions. BAM, BAI and TDF files are uploaded from three independent biological replicates that we conducted for wild type and carbonic anhydrase mutant seedlings. Each set of replicates includes >1000 seedlings per sample and both genotypes were grown at low and elevated CO2 (hence 4 samples per set of replicates). Sampling was done at 5 days after germination to capture early signaling events as seedlings were adapting to the CO2 stimulus. This project was funded by grants from the National Science Foundation (MCB0918220 and MCB1414339 to J.I.S. and IOS-1025837 to S.C.P.) and the National Institutes of Health (GM060396-ES010337 to J.I.S.), a BAYER-UC Discovery grant (J.I.S.) and a seed grant from the UCSD-SDCSB (GM085764) Systems Biology Center (C.B.E.). A grant from the Division of Chemical Sciences, Geosciences, and Biosciences, Office of Basic Energy Sciences of the US Department of Energy (DE-FG02-03ER15449) to J.I.S. funded complementation and localization analyses.
Research Data Curation Program, UC San Diego, La Jolla, 92093-0175 (http://libraries.ucsd.edu/services/data-curation/)
Engineer, Cawas B; Ghassemian, Majid; Anderson, Jeffrey C; Peck, Scott C; Hu, Honghong; Schroeder, Julian I (2015): Data from: Carbonic anhydrases, EPF2 and a novel protease mediate CO2 control of stomatal development. UC San Diego Library Digital Collections. http://dx.doi.org/10.6075/J0TD9V7X
Engineer, C.B., Ghassemian, M., Anderson, J.C., Peck, S.C., Hu, H., and Schroeder, J.I. (2014) Carbonic anhydrases, EPF2 and a novel protease mediate CO2 control of stomatal development. Nature 513, 246-250. doi:10.1038/nature13452
Type
Dataset
Subject
CO2
RNA-Seq
Transcriptomics
Cotyledon
Thale-cress
Arabidopsis thaliana
Gunneridae
Brassicaceae

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