Skip to main content

Dataset / Heterogeneous Stock (HS) Rat Genotypes, Version 3

Have a question about this item?

Item information. View source record on contributor's website.

Title
Heterogeneous Stock (HS) Rat Genotypes, Version 3
Creator
Palmer, Abraham A
Contributor
Palmer, Abraham A.
Date Created and/or Issued
Date of data collection: 2014 to 2023. Date of version: 2023-07-12.
Contributing Institution
UC San Diego, Research Data Curation Program
Collection
Genotype data from: NIDA Center for GWAS in Outbred rats
Rights Information
Under copyright
Constraint(s) on Use: This work is protected by the U.S. Copyright Law (Title 17, U.S.C.). Use of this work beyond that allowed by "fair use" or any license applied to this work requires written permission of the copyright holder(s). Responsibility for obtaining permissions and any use and distribution of this work rests exclusively with the user and not the UC San Diego Library. Inquiries can be made to the UC San Diego Library program having custody of the work.
Use: This work is available from the UC San Diego Library. This digital copy of the work is intended to support research, teaching, and private study.
Rights Holder and Contact
UC Regents
Description
This collection contains genotype data collected as part of the NIDA Center for GWAS in Outbred rats and more than 10 additional research projects that use N/NIH heterogeneous stock (HS) outbred rats. We obtain genotypes for DNA samples derived from rats that are phenotyped by different research projects. We use these genotypes to perform genome wide association studies (GWAS) and a number of related analyses.
NIDA center for genetic studies of drug abuse in outbred rats (P50DA037844).
Research Data Curation Program, UC San Diego, La Jolla, 92093-0175 (https://lib.ucsd.edu/rdcp)
Palmer, Abraham A. (2023). Heterogeneous Stock (HS) Rat Genotypes, Version 3. In Genotype Data from: NIDA Center for GWAS in Outbred Rats. UC San Diego Library Digital Collections. https://doi.org/10.6075/J00G3KBX
We release updated data every 2-3 months, and provide detailed information on our genotyping pipeline in the Readme file associated with the object.
Type
dataset
Identifier
ark:/20775/bd6647448j
Language
English
Subject
Imputation
Rat
Biological sciences
Heterogeneous stock (HS) rats
Genotyping-by-sequencing (GBS)
Low-Coverage Whole Genome Sequencing (lc-WGS)
Genetics
Rattus norvegicus

About the collections in Calisphere

Learn more about the collections in Calisphere. View our statement on digital primary resources.

Copyright, permissions, and use

If you're wondering about permissions and what you can do with this item, a good starting point is the "rights information" on this page. See our terms of use for more tips.

Share your story

Has Calisphere helped you advance your research, complete a project, or find something meaningful? We'd love to hear about it; please send us a message.

Explore related content on Calisphere: